Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g01374.P2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4454
ACGTcount: A:0.35, C:0.12, G:0.20, T:0.33


Found at i:3062 original size:47 final size:47

Alignment explanation


    Indices: 2992--3212  Score: 197
    Period size: 47  Copynumber: 4.7  Consensus size: 47

       2982 TTTGTGTGCC

                             *            *                 
       2992 AGTGTAAGACCATGTCTAGGACATGGCATCAGCATTGAAACGAGAGCT
          1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCA-TGAAACGAGAGCT

                           *                               * 
       3040 AGTGTAAGA-CATGTTTGGGACAT-GCATCGGC-T---ACGAGATGTGT
          1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATGAAACGAGA-G-CT

                              *                        *  *    
       3083 CAGTGTAAGACCATGTCTAGGACATGGCATCGGCATGAAAATGTGAAAGCT
          1 -AGTGTAAGACCATGTCTGGGACATGGCATCGGCATG-AAA--CGAGAGCT

                                           ***     *        *
       3134 AGTGTAAGACCATGTCTGGGACATGGCATCGATTTGATGGAC-A-AGCC
          1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATGA--AACGAGAGCT

                                            
       3181 AGTGTAAGACCATGTCTGGGACATGGCATCGG
          1 AGTGTAAGACCATGTCTGGGACATGGCATCGG

       3213 TATTATACCC


Statistics
Matches: 142,  Mismatches: 17, Indels: 29
        0.76            0.09        0.15

Matches are distributed among these distances:
  41    6  0.04
  42    1  0.01
  43    1  0.01
  44   10  0.07
  45   12  0.08
  46   15  0.11
  47   47  0.33
  48   10  0.07
  49    1  0.01
  50   32  0.23
  51    3  0.02
  52    1  0.01
  53    3  0.02

ACGTcount: A:0.29, C:0.18, G:0.30, T:0.23


Consensus pattern (47 bp):   
AGTGTAAGACCATGTCTGGGACATGGCATCGGCATGAAACGAGAGCT
Done.