Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g01375.N2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2091
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.32


Found at i:1814 original size:23 final size:23

Alignment explanation


    Indices: 1784--1831  Score: 96
    Period size: 23  Copynumber: 2.1  Consensus size: 23

       1774 CTTTGATATC

                                   
       1784 AGCCATCTCTGTGAAATCTGGTA
          1 AGCCATCTCTGTGAAATCTGGTA

                                   
       1807 AGCCATCTCTGTGAAATCTGGTA
          1 AGCCATCTCTGTGAAATCTGGTA

              
       1830 AG
          1 AG

       1832 TTACACACTC


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  23   25  1.00

ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29


Consensus pattern (23 bp):   
AGCCATCTCTGTGAAATCTGGTA
Done.