Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g01376.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 577

Length: 962
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.33


Found at i:685 original size:23 final size:23

Alignment explanation


    Indices: 655--702  Score: 96
    Period size: 23  Copynumber: 2.1  Consensus size: 23

        645 CTTTGATATC

                                   
        655 AGCCATCTCTGTGAAATCTGGTA
          1 AGCCATCTCTGTGAAATCTGGTA

                                   
        678 AGCCATCTCTGTGAAATCTGGTA
          1 AGCCATCTCTGTGAAATCTGGTA

              
        701 AG
          1 AG

        703 TTACACACTC


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  23   25  1.00

ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29


Consensus pattern (23 bp):   
AGCCATCTCTGTGAAATCTGGTA
Done.