Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g01385.F11

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4183
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.34


Found at i:10 original size:4 final size:4

Alignment explanation


    Indices: 2--27  Score: 52
    Period size: 4  Copynumber: 6.5  Consensus size: 4

          1 G

                                            
          2 AAGA AAGA AAGA AAGA AAGA AAGA AA
          1 AAGA AAGA AAGA AAGA AAGA AAGA AA

         28 AACACAGACA


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   4   22  1.00

ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00


Consensus pattern (4 bp):   
AAGA

Found at i:3383 original size:13 final size:14

Alignment explanation


    Indices: 3365--3393  Score: 51
    Period size: 13  Copynumber: 2.1  Consensus size: 14

       3355 GATGCTTATG

                          
       3365 TTTAATTCA-TGAT
          1 TTTAATTCATTGAT

                          
       3378 TTTAATTCATTGAT
          1 TTTAATTCATTGAT

              
       3392 TT
          1 TT

       3394 CGTTGTTGTG


Statistics
Matches: 15,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  13    9  0.60
  14    6  0.40

ACGTcount: A:0.28, C:0.07, G:0.07, T:0.59


Consensus pattern (14 bp):   
TTTAATTCATTGAT
Done.