Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g01385.R1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1749
ACGTcount: A:0.31, C:0.18, G:0.20, T:0.30


Found at i:10 original size:4 final size:4

Alignment explanation


    Indices: 2--27  Score: 52
    Period size: 4  Copynumber: 6.5  Consensus size: 4

          1 G

                                            
          2 AAGA AAGA AAGA AAGA AAGA AAGA AA
          1 AAGA AAGA AAGA AAGA AAGA AAGA AA

         28 AACACAGACA


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   4   22  1.00

ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00


Consensus pattern (4 bp):   
AAGA

Done.