Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g01387.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3285
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.34


Found at i:1374 original size:44 final size:44

Alignment explanation


    Indices: 1311--1400  Score: 180
    Period size: 44  Copynumber: 2.0  Consensus size: 44

       1301 TATTCCAATA

                                                        
       1311 CTGTGAATTGTTGTTGTTTAAGGTCATAATGAATGAATGTGTTG
          1 CTGTGAATTGTTGTTGTTTAAGGTCATAATGAATGAATGTGTTG

                                                        
       1355 CTGTGAATTGTTGTTGTTTAAGGTCATAATGAATGAATGTGTTG
          1 CTGTGAATTGTTGTTGTTTAAGGTCATAATGAATGAATGTGTTG

              
       1399 CT
          1 CT

       1401 TTTCTTTCTA


Statistics
Matches: 46,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  44   46  1.00

ACGTcount: A:0.24, C:0.06, G:0.27, T:0.43


Consensus pattern (44 bp):   
CTGTGAATTGTTGTTGTTTAAGGTCATAATGAATGAATGTGTTG
Done.