Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g01391.M1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 886

Length: 1478
ACGTcount: A:0.30, C:0.19, G:0.17, T:0.33


Found at i:1357 original size:66 final size:66

Alignment explanation


    Indices: 1251--1382  Score: 264
    Period size: 66  Copynumber: 2.0  Consensus size: 66

       1241 TCGAGTCATT

                                                                             
       1251 ATGCTGTCCAATTCCACATACAAAGACTTTGGAAGTAAAAAATAGGCCATAGTGTAAGTGGGTAT
          1 ATGCTGTCCAATTCCACATACAAAGACTTTGGAAGTAAAAAATAGGCCATAGTGTAAGTGGGTAT

             
       1316 A
         66 A

                                                                             
       1317 ATGCTGTCCAATTCCACATACAAAGACTTTGGAAGTAAAAAATAGGCCATAGTGTAAGTGGGTAT
          1 ATGCTGTCCAATTCCACATACAAAGACTTTGGAAGTAAAAAATAGGCCATAGTGTAAGTGGGTAT

             
       1382 A
         66 A

       1383 GCATGTAAAA


Statistics
Matches: 66,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  66   66  1.00

ACGTcount: A:0.38, C:0.15, G:0.21, T:0.26


Consensus pattern (66 bp):   
ATGCTGTCCAATTCCACATACAAAGACTTTGGAAGTAAAAAATAGGCCATAGTGTAAGTGGGTAT
A
Done.