Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g01404.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1750
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29


Found at i:782 original size:51 final size:51

Alignment explanation


    Indices: 711--845  Score: 173
    Period size: 51  Copynumber: 2.7  Consensus size: 51

        701 TGAAAACATG

                  *                                   *        
        711 ATCTTAAAAGATATGA-TTTATAATCTTAGAGATCTTAGATATGATATGTA
          1 ATCTTAGAAGATATGATTTTATAATCTTAGAGATCTTAGATAAGATATGTA

              *   *       *         **   * *                   
        761 ATTTTATAAGATATTATTTTATAAGATTACATATCTTAGATAAGATATGTA
          1 ATCTTAGAAGATATGATTTTATAATCTTAGAGATCTTAGATAAGATATGTA

                                   *          
        812 ATCTTAGAAGATATGATTTTATATTCTTAGAGAT
          1 ATCTTAGAAGATATGATTTTATAATCTTAGAGAT

        846 TTGATTGTAG


Statistics
Matches: 68,  Mismatches: 16, Indels: 1
        0.80            0.19        0.01

Matches are distributed among these distances:
  50   13  0.19
  51   55  0.81

ACGTcount: A:0.39, C:0.05, G:0.13, T:0.43


Consensus pattern (51 bp):   
ATCTTAGAAGATATGATTTTATAATCTTAGAGATCTTAGATAAGATATGTA

Done.