Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g01409.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 636

Length: 1060
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.33


Found at i:835 original size:41 final size:41

Alignment explanation


    Indices: 778--867  Score: 171
    Period size: 41  Copynumber: 2.2  Consensus size: 41

        768 ATTGGACAAT

                                                     
        778 GTTTGTTTAAATGTCACAATGAATATGGCATTTCATTTCTA
          1 GTTTGTTTAAATGTCACAATGAATATGGCATTTCATTTCTA

                                                     
        819 GTTTGTTTAAATGTCACAATGAATATGGCATTTCATTTCTA
          1 GTTTGTTTAAATGTCACAATGAATATGGCATTTCATTTCTA

                    
        860 GTTCTGTT
          1 GTT-TGTT

        868 ACTAATTCAC


Statistics
Matches: 48,  Mismatches: 0, Indels: 1
        0.98            0.00        0.02

Matches are distributed among these distances:
  41   44  0.92
  42    4  0.08

ACGTcount: A:0.27, C:0.12, G:0.16, T:0.46


Consensus pattern (41 bp):   
GTTTGTTTAAATGTCACAATGAATATGGCATTTCATTTCTA
Done.