Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g01429.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 352

Length: 587
ACGTcount: A:0.31, C:0.23, G:0.16, T:0.30


Found at i:280 original size:6 final size:6

Alignment explanation


    Indices: 269--302  Score: 50
    Period size: 6  Copynumber: 5.7  Consensus size: 6

        259 CAGTCAAGTT

                                   *         *     
        269 CATCAC CATCAC CATCAC CACCAC CATCAT CATC
          1 CATCAC CATCAC CATCAC CATCAC CATCAC CATC

        303 CTTTTTATCC


Statistics
Matches: 25,  Mismatches: 3, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
   6   25  1.00

ACGTcount: A:0.32, C:0.50, G:0.00, T:0.18


Consensus pattern (6 bp):   
CATCAC

Done.