Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g01472.N6

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3354
ACGTcount: A:0.27, C:0.17, G:0.18, T:0.38


Found at i:1274 original size:34 final size:34

Alignment explanation


    Indices: 1229--1296  Score: 118
    Period size: 34  Copynumber: 2.0  Consensus size: 34

       1219 CATCATTGTT

                  *                           
       1229 GTCTTATTGAGAATGCTCTAGTGCTTGATGTGTA
          1 GTCTTAGTGAGAATGCTCTAGTGCTTGATGTGTA

                          *                   
       1263 GTCTTAGTGAGAATTCTCTAGTGCTTGATGTGTA
          1 GTCTTAGTGAGAATGCTCTAGTGCTTGATGTGTA

       1297 AGGACATAGA


Statistics
Matches: 32,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  34   32  1.00

ACGTcount: A:0.21, C:0.12, G:0.26, T:0.41


Consensus pattern (34 bp):   
GTCTTAGTGAGAATGCTCTAGTGCTTGATGTGTA
Done.