Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g01484.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2656
ACGTcount: A:0.29, C:0.15, G:0.18, T:0.37


Found at i:1624 original size:21 final size:21

Alignment explanation


    Indices: 1598--1641  Score: 79
    Period size: 21  Copynumber: 2.1  Consensus size: 21

       1588 TGAAGTAGTA

                                 
       1598 TTGATTAAGTAGTATTGCATT
          1 TTGATTAAGTAGTATTGCATT

                             *   
       1619 TTGATTAAGTAGTATTGTATT
          1 TTGATTAAGTAGTATTGCATT

              
       1640 TT
          1 TT

       1642 TGGATGGTTT


Statistics
Matches: 22,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  21   22  1.00

ACGTcount: A:0.27, C:0.02, G:0.18, T:0.52


Consensus pattern (21 bp):   
TTGATTAAGTAGTATTGCATT
Done.