Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g01488.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 810

Length: 1350
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28


Found at i:1117 original size:48 final size:48

Alignment explanation


    Indices: 1065--1184  Score: 195
    Period size: 48  Copynumber: 2.5  Consensus size: 48

       1055 TCCAAGTGGC

                                                       *    
       1065 GGCTGGAGTCGAGAACAAAGGGATAGAGATTATAGGAATCCGAGCGGT
          1 GGCTGGAGTCGAGAACAAAGGGATAGAGATTATAGGAATCCGAACGGT

                                             *              
       1113 GGCTGGAGTCGAGAACAAAGGGATAGAGATTATGGGAATCCGAACGGT
          1 GGCTGGAGTCGAGAACAAAGGGATAGAGATTATAGGAATCCGAACGGT

                  * * *             
       1161 GGCTGGGGCCAAGAACAAAGGGAT
          1 GGCTGGAGTCGAGAACAAAGGGAT

       1185 CGGAACTCCT


Statistics
Matches: 67,  Mismatches: 5, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  48   67  1.00

ACGTcount: A:0.33, C:0.13, G:0.38, T:0.15


Consensus pattern (48 bp):   
GGCTGGAGTCGAGAACAAAGGGATAGAGATTATAGGAATCCGAACGGT
Done.