Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g01488.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 704

Length: 1174
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.27


Found at i:941 original size:48 final size:48

Alignment explanation


    Indices: 889--1008  Score: 195
    Period size: 48  Copynumber: 2.5  Consensus size: 48

        879 TCCAAGTGGC

                                                       *    
        889 GGCTGGAGTCGAGAACAAAGGGATAGAGATTATAGGAATCCGAGCGGT
          1 GGCTGGAGTCGAGAACAAAGGGATAGAGATTATAGGAATCCGAACGGT

                                             *              
        937 GGCTGGAGTCGAGAACAAAGGGATAGAGATTATGGGAATCCGAACGGT
          1 GGCTGGAGTCGAGAACAAAGGGATAGAGATTATAGGAATCCGAACGGT

                  * * *             
        985 GGCTGGGGCCAAGAACAAAGGGAT
          1 GGCTGGAGTCGAGAACAAAGGGAT

       1009 CGGAACTCCT


Statistics
Matches: 67,  Mismatches: 5, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  48   67  1.00

ACGTcount: A:0.33, C:0.13, G:0.38, T:0.15


Consensus pattern (48 bp):   
GGCTGGAGTCGAGAACAAAGGGATAGAGATTATAGGAATCCGAACGGT
Done.