Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g01491.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 217

Length: 362
ACGTcount: A:0.28, C:0.13, G:0.24, T:0.35


Found at i:72 original size:48 final size:48

Alignment explanation


    Indices: 1--158  Score: 237
    Period size: 48  Copynumber: 3.3  Consensus size: 48

                                       *                    
          1 TGATATTAGCACTTCGGGTGCAAGTTACATTGATTTGGCTTCGGGCCA
          1 TGATATTAGCACTTCGGGTGCAAGTTATATTGATTTGGCTTCGGGCCA

                   * *                                *      
         49 TGATATTGGTACTTCGGGTGCAAGCTT-TATTGATTTGGCTTTGGGCCA
          1 TGATATTAGCACTTCGGGTGCAAG-TTATATTGATTTGGCTTCGGGCCA

                                    *        *              
         97 TGATATTAGCACTTCGGGTGCAAGATATATTGAGTTGGCTTCGGGCCA
          1 TGATATTAGCACTTCGGGTGCAAGTTATATTGATTTGGCTTCGGGCCA

                  *       
        145 TGATATGAGCACTT
          1 TGATATTAGCACTT

        159 AGTATGTGAG


Statistics
Matches: 98,  Mismatches: 10, Indels: 4
        0.88            0.09        0.04

Matches are distributed among these distances:
  47    1  0.01
  48   95  0.97
  49    2  0.02

ACGTcount: A:0.21, C:0.16, G:0.28, T:0.35


Consensus pattern (48 bp):   
TGATATTAGCACTTCGGGTGCAAGTTATATTGATTTGGCTTCGGGCCA
Done.