Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g01460.N11

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 778

Length: 1298
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.31


Found at i:1047 original size:2 final size:2

Alignment explanation


    Indices: 1040--1067  Score: 56
    Period size: 2  Copynumber: 14.0  Consensus size: 2

       1030 TTTATTCAAT

                                                     
       1040 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA

       1068 AAGGCAAAGA


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   26  1.00

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
TA

Done.