Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g01503.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2459
ACGTcount: A:0.32, C:0.20, G:0.19, T:0.29


Found at i:210 original size:33 final size:33

Alignment explanation


    Indices: 173--240  Score: 118
    Period size: 33  Copynumber: 2.1  Consensus size: 33

        163 AATCTCATAT

                            *                
        173 TTATCATAGCCTCTTTTCAAGCAGAATAATTGA
          1 TTATCATAGCCTCTTTCCAAGCAGAATAATTGA

                                 *           
        206 TTATCATAGCCTCTTTCCAAGTAGAATAATTGA
          1 TTATCATAGCCTCTTTCCAAGCAGAATAATTGA

              
        239 TT
          1 TT

        241 CCAGCAAGAT


Statistics
Matches: 33,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  33   33  1.00

ACGTcount: A:0.32, C:0.18, G:0.12, T:0.38


Consensus pattern (33 bp):   
TTATCATAGCCTCTTTCCAAGCAGAATAATTGA
Done.