Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g01524.C3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1704
ACGTcount: A:0.29, C:0.17, G:0.18, T:0.37


Found at i:1492 original size:25 final size:25

Alignment explanation


    Indices: 1464--1521  Score: 100
    Period size: 25  Copynumber: 2.4  Consensus size: 25

       1454 AATTTGATAT

                                     
       1464 TTCAGCAAAGAAGGCATTGTTGAGA
          1 TTCAGCAAAGAAGGCATTGTTGAGA

                   *                 
       1489 TTCAGCAGAGAAGGCATTGTTGAGA
          1 TTCAGCAAAGAAGGCATTGTTGAGA

                     
       1514 TTC-GCAAA
          1 TTCAGCAAA

       1522 CTCAATAAAT


Statistics
Matches: 31,  Mismatches: 2, Indels: 1
        0.91            0.06        0.03

Matches are distributed among these distances:
  24    4  0.13
  25   27  0.87

ACGTcount: A:0.34, C:0.14, G:0.28, T:0.24


Consensus pattern (25 bp):   
TTCAGCAAAGAAGGCATTGTTGAGA
Done.