Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g01524.C4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 646

Length: 1078
ACGTcount: A:0.30, C:0.19, G:0.18, T:0.32


Found at i:866 original size:25 final size:25

Alignment explanation


    Indices: 838--895  Score: 100
    Period size: 25  Copynumber: 2.4  Consensus size: 25

        828 AATTTGATAT

                                     
        838 TTCAGCAAAGAAGGCATTGTTGAGA
          1 TTCAGCAAAGAAGGCATTGTTGAGA

                   *                 
        863 TTCAGCAGAGAAGGCATTGTTGAGA
          1 TTCAGCAAAGAAGGCATTGTTGAGA

                     
        888 TTC-GCAAA
          1 TTCAGCAAA

        896 CTCAATAAAT


Statistics
Matches: 31,  Mismatches: 2, Indels: 1
        0.91            0.06        0.03

Matches are distributed among these distances:
  24    4  0.13
  25   27  0.87

ACGTcount: A:0.34, C:0.14, G:0.28, T:0.24


Consensus pattern (25 bp):   
TTCAGCAAAGAAGGCATTGTTGAGA
Done.