Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g01555.P2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4585
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.32


Found at i:1920 original size:24 final size:24

Alignment explanation


    Indices: 1885--1942  Score: 98
    Period size: 24  Copynumber: 2.4  Consensus size: 24

       1875 CAAAAAAAAA

                   *                
       1885 AAAAAAAAGCAAGTACCACTTTAG
          1 AAAAAAATGCAAGTACCACTTTAG

            *                       
       1909 GAAAAAATGCAAGTACCACTTTAG
          1 AAAAAAATGCAAGTACCACTTTAG

                      
       1933 AAAAAAATGC
          1 AAAAAAATGC

       1943 CAAACTTAGG


Statistics
Matches: 31,  Mismatches: 3, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  24   31  1.00

ACGTcount: A:0.53, C:0.16, G:0.14, T:0.17


Consensus pattern (24 bp):   
AAAAAAATGCAAGTACCACTTTAG

Found at i:3377 original size:11 final size:11

Alignment explanation


    Indices: 3361--3385  Score: 50
    Period size: 11  Copynumber: 2.3  Consensus size: 11

       3351 CAGCTTTATC

                       
       3361 GATCATTGAAT
          1 GATCATTGAAT

                       
       3372 GATCATTGAAT
          1 GATCATTGAAT

               
       3383 GAT
          1 GAT

       3386 AAGTTTATTG


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  11   14  1.00

ACGTcount: A:0.36, C:0.08, G:0.20, T:0.36


Consensus pattern (11 bp):   
GATCATTGAAT
Done.