Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g01584.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1918
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.34


Found at i:1204 original size:52 final size:52

Alignment explanation


    Indices: 1128--1226  Score: 171
    Period size: 52  Copynumber: 1.9  Consensus size: 52

       1118 CAAGCCTAGA

                                                                
       1128 AAAAGAGTTGTTTCATATTGGCTAGTATAATCCAATTGATGCAATCCTCAAG
          1 AAAAGAGTTGTTTCATATTGGCTAGTATAATCCAATTGATGCAATCCTCAAG

                 *       **                                
       1180 AAAAGGGTTGTTTTGTATTGGCTAGTATAATCCAATTGATGCAATCC
          1 AAAAGAGTTGTTTCATATTGGCTAGTATAATCCAATTGATGCAATCC

       1227 CTGACTTAAT


Statistics
Matches: 44,  Mismatches: 3, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  52   44  1.00

ACGTcount: A:0.32, C:0.14, G:0.19, T:0.34


Consensus pattern (52 bp):   
AAAAGAGTTGTTTCATATTGGCTAGTATAATCCAATTGATGCAATCCTCAAG
Done.