Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g01610.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3965
ACGTcount: A:0.29, C:0.15, G:0.18, T:0.39


Found at i:2196 original size:47 final size:47

Alignment explanation


    Indices: 2127--2225  Score: 180
    Period size: 47  Copynumber: 2.1  Consensus size: 47

       2117 AAGTTCAAAG

                         *                      *          
       2127 AAATTCATATCCTGGTGAAGTTAGAAATTGTGGATACTATATATACT
          1 AAATTCATATCCTAGTGAAGTTAGAAATTGTGGATAATATATATACT

                                                           
       2174 AAATTCATATCCTAGTGAAGTTAGAAATTGTGGATAATATATATACT
          1 AAATTCATATCCTAGTGAAGTTAGAAATTGTGGATAATATATATACT

                 
       2221 AAATT
          1 AAATT

       2226 AATGTATTTA


Statistics
Matches: 50,  Mismatches: 2, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  47   50  1.00

ACGTcount: A:0.39, C:0.09, G:0.15, T:0.36


Consensus pattern (47 bp):   
AAATTCATATCCTAGTGAAGTTAGAAATTGTGGATAATATATATACT
Done.