Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g01613.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1840
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.31


Found at i:1551 original size:16 final size:17

Alignment explanation


    Indices: 1530--1567  Score: 53
    Period size: 16  Copynumber: 2.3  Consensus size: 17

       1520 CTGTAATCTC

                              
       1530 TTTTTGTCTTTTT-TT-T
          1 TTTTTGT-TTTTTCTTCT

                             
       1546 TTTTTGTTTTTTCTTCT
          1 TTTTTGTTTTTTCTTCT

                 
       1563 TTTTT
          1 TTTTT

       1568 TTAAAAAAAA


Statistics
Matches: 20,  Mismatches: 0, Indels: 3
        0.87            0.00        0.13

Matches are distributed among these distances:
  15    5  0.25
  16    9  0.45
  17    6  0.30

ACGTcount: A:0.00, C:0.08, G:0.05, T:0.87


Consensus pattern (17 bp):   
TTTTTGTTTTTTCTTCT
Done.