Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g01619.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2248
ACGTcount: A:0.28, C:0.15, G:0.24, T:0.33


Found at i:30 original size:13 final size:12

Alignment explanation


    Indices: 9--45  Score: 51
    Period size: 12  Copynumber: 3.2  Consensus size: 12

          1 GCTGCAAC

                        
          9 AAAAACAAAGAA
          1 AAAAACAAAGAA

                         
         21 AAAAACCAAA-AA
          1 AAAAA-CAAAGAA

                        
         33 AAAAA-AAAGAA
          1 AAAAACAAAGAA

              
         44 AA
          1 AA

         46 GAAAGAAAGG


Statistics
Matches: 23,  Mismatches: 0, Indels: 5
        0.82            0.00        0.18

Matches are distributed among these distances:
  10    3  0.13
  11    4  0.17
  12   12  0.52
  13    4  0.17

ACGTcount: A:0.86, C:0.08, G:0.05, T:0.00


Consensus pattern (12 bp):   
AAAAACAAAGAA
Done.