Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g01622.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 659

Length: 1099
ACGTcount: A:0.34, C:0.18, G:0.19, T:0.30


Found at i:573 original size:1 final size:1

Alignment explanation


    Indices: 567--603  Score: 74
    Period size: 1  Copynumber: 37.0  Consensus size: 1

        557 ATACAATCAC

                                                 
        567 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
          1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

        604 GAGTACACCA


Statistics
Matches: 36,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   1   36  1.00

ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00


Consensus pattern (1 bp):   
A

Found at i:1069 original size:6 final size:6

Alignment explanation


    Indices: 1058--1086  Score: 51
    Period size: 6  Copynumber: 5.0  Consensus size: 6

       1048 AAGGCAAACA

                                              
       1058 AAAAGC AAAAGC AAAAGC AAAAG- AAAAGC
          1 AAAAGC AAAAGC AAAAGC AAAAGC AAAAGC

       1087 GTTAGACTTT


Statistics
Matches: 22,  Mismatches: 0, Indels: 2
        0.92            0.00        0.08

Matches are distributed among these distances:
   5    5  0.23
   6   17  0.77

ACGTcount: A:0.69, C:0.14, G:0.17, T:0.00


Consensus pattern (6 bp):   
AAAAGC

Done.