Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g00162.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1717
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.30


Found at i:1523 original size:22 final size:22

Alignment explanation


    Indices: 1495--1538  Score: 88
    Period size: 22  Copynumber: 2.0  Consensus size: 22

       1485 GGTATGAGGC

                                  
       1495 TCAAAGGGTTTAGACAAAAAGA
          1 TCAAAGGGTTTAGACAAAAAGA

                                  
       1517 TCAAAGGGTTTAGACAAAAAGA
          1 TCAAAGGGTTTAGACAAAAAGA

       1539 AAAGTTTGTT


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  22   22  1.00

ACGTcount: A:0.50, C:0.09, G:0.23, T:0.18


Consensus pattern (22 bp):   
TCAAAGGGTTTAGACAAAAAGA

Done.