Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga06g01639.P1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 838
Length: 1397
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.29
Found at i:1141 original size:162 final size:163
Alignment explanation
Indices: 942--1266 Score: 634
Period size: 162 Copynumber: 2.0 Consensus size: 163
932 AACGAAAAGA
942 GCTATATGTACTTCAATATTCATGACCTCAATAAGCAGTAATTGCCGCTTGTAGAATTCATAAAA
1 GCTATATGTACTTCAATA-TCATGACCTCAATAAGCAGTAATTGCCGCTTGTAGAATTCATAAAA
1007 TAAATTCTTTGATTCTCAACCTGTCAGCCATCATTGAATAAAGATTCTTTTGTGTTGAAGCAAAT
65 TAAATTCTTTGATTCTCAACCTGTCAGCCATCATTGAATAAAGATTCTTTTGTGTTGAAGCAAAT
1072 TTGCTGTAATAATCTACTGTTATTTGACAACTAG
130 TTGCTGTAATAATCTACTGTTATTTGACAACTAG
1106 GCTATATGTACTTCAATA-CATGACCTCAATAAGCAGTAATTGCCGCTTGTAGAATTCATAAAAT
1 GCTATATGTACTTCAATATCATGACCTCAATAAGCAGTAATTGCCGCTTGTAGAATTCATAAAAT
1170 AAATTCTTTGATTCTCAACCTGTCAGCCATCATTGAATAAAGATTCTTTTGTGTTGAAGCAAATT
66 AAATTCTTTGATTCTCAACCTGTCAGCCATCATTGAATAAAGATTCTTTTGTGTTGAAGCAAATT
1235 TGCTGTAATAATCTACTGTTATTTGACAACTA
131 TGCTGTAATAATCTACTGTTATTTGACAACTA
1267 CATTACAAGT
Statistics
Matches: 161, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
162 143 0.89
164 18 0.11
ACGTcount: A:0.33, C:0.17, G:0.14, T:0.36
Consensus pattern (163 bp):
GCTATATGTACTTCAATATCATGACCTCAATAAGCAGTAATTGCCGCTTGTAGAATTCATAAAAT
AAATTCTTTGATTCTCAACCTGTCAGCCATCATTGAATAAAGATTCTTTTGTGTTGAAGCAAATT
TGCTGTAATAATCTACTGTTATTTGACAACTAG
Done.