Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g01648.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2169
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29


Found at i:1998 original size:44 final size:44

Alignment explanation


    Indices: 1929--2015  Score: 147
    Period size: 44  Copynumber: 2.0  Consensus size: 44

       1919 GCCTTTGACT

                *                             *         
       1929 GTCCCAACTCAATCAAAATCCTAGAACACATTTGGCAATTTATG
          1 GTCCAAACTCAATCAAAATCCTAGAACACATTTGACAATTTATG

                                *                      
       1973 GTCCAAACTCAATCAAAATCGTAGAACACATTTGACAATTTAT
          1 GTCCAAACTCAATCAAAATCCTAGAACACATTTGACAATTTAT

       2016 CTATCTACTT


Statistics
Matches: 40,  Mismatches: 3, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  44   40  1.00

ACGTcount: A:0.39, C:0.23, G:0.10, T:0.28


Consensus pattern (44 bp):   
GTCCAAACTCAATCAAAATCCTAGAACACATTTGACAATTTATG
Done.