Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g01650.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2089
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.29


Found at i:52 original size:2 final size:2

Alignment explanation


    Indices: 45--91  Score: 85
    Period size: 2  Copynumber: 23.5  Consensus size: 2

         35 CAAATTGAAG

                                                                         *
         45 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TT
          1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC

                   
         87 TC TC T
          1 TC TC T

         92 TTTTCTCTGC


Statistics
Matches: 43,  Mismatches: 2, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
   2   43  1.00

ACGTcount: A:0.00, C:0.47, G:0.00, T:0.53


Consensus pattern (2 bp):   
TC

Found at i:96 original size:8 final size:8

Alignment explanation


    Indices: 47--99  Score: 61
    Period size: 8  Copynumber: 6.6  Consensus size: 8

         37 AATTGAAGTC

                   *
         47 TCTCTCTC
          1 TCTCTCTT

                   *
         55 TCTCTCTC
          1 TCTCTCTT

                   *
         63 TCTCTCTC
          1 TCTCTCTT

                   *
         71 TCTCTCTC
          1 TCTCTCTT

                    
         79 TCTCTCTT
          1 TCTCTCTT

                 *  
         87 TCTCTTTT
          1 TCTCTCTT

                 
         95 TCTCT
          1 TCTCT

        100 GCATTGGTTC


Statistics
Matches: 43,  Mismatches: 2, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
   8   43  1.00

ACGTcount: A:0.00, C:0.43, G:0.00, T:0.57


Consensus pattern (8 bp):   
TCTCTCTT
Done.