Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g01655.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4037
ACGTcount: A:0.29, C:0.16, G:0.18, T:0.38


Found at i:1199 original size:23 final size:23

Alignment explanation


    Indices: 1173--1218  Score: 92
    Period size: 23  Copynumber: 2.0  Consensus size: 23

       1163 ACTAGAAAAC

                                   
       1173 ATCTGTTAAATCGGATTAGGTGG
          1 ATCTGTTAAATCGGATTAGGTGG

                                   
       1196 ATCTGTTAAATCGGATTAGGTGG
          1 ATCTGTTAAATCGGATTAGGTGG

       1219 CATTTAAAAA


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  23   23  1.00

ACGTcount: A:0.26, C:0.09, G:0.30, T:0.35


Consensus pattern (23 bp):   
ATCTGTTAAATCGGATTAGGTGG
Done.