Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g01659.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3080
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30


Found at i:99 original size:9 final size:9

Alignment explanation


    Indices: 85--115  Score: 53
    Period size: 9  Copynumber: 3.4  Consensus size: 9

         75 GGATATCGTG

                     
         85 GAAATCCTA
          1 GAAATCCTA

                     
         94 GAAATCCTA
          1 GAAATCCTA

                   * 
        103 GAAATCCAA
          1 GAAATCCTA

                
        112 GAAA
          1 GAAA

        116 ACCAAGAAAA


Statistics
Matches: 21,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
   9   21  1.00

ACGTcount: A:0.52, C:0.19, G:0.13, T:0.16


Consensus pattern (9 bp):   
GAAATCCTA

Found at i:123 original size:18 final size:18

Alignment explanation


    Indices: 85--124  Score: 53
    Period size: 18  Copynumber: 2.2  Consensus size: 18

         75 GGATATCGTG

                   *     *  * 
         85 GAAATCCTAGAAATCCTA
          1 GAAATCCAAGAAAACCAA

                              
        103 GAAATCCAAGAAAACCAA
          1 GAAATCCAAGAAAACCAA

                
        121 GAAA
          1 GAAA

        125 ACAAGAGCCC


Statistics
Matches: 19,  Mismatches: 3, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  18   19  1.00

ACGTcount: A:0.55, C:0.20, G:0.12, T:0.12


Consensus pattern (18 bp):   
GAAATCCAAGAAAACCAA
Done.