Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g01676.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3712
ACGTcount: A:0.28, C:0.17, G:0.17, T:0.37


Found at i:1061 original size:139 final size:139

Alignment explanation


    Indices: 811--1229  Score: 739
    Period size: 139  Copynumber: 3.0  Consensus size: 139

        801 TCTACTTAAA

                                 *                             *             
        811 GATATTGTGATATCCTCGTACTGATAATATGATATATTATTGACTTATTTGATTCTTTGTTGACA
          1 GATATTGTGATATCCTCGTACCGATAATATGATATATTATTGACTTATTTGGTTCTTTGTTGACA

              *            *                                                 
        876 ACGGTTTCTTATCATTTAGTTTTTAAATTTCTTTACATTAGCAAAGTATGGTTGTGACTTATAAG
         66 ACCGTTTCTTATCATGTAGTTTTTAAATTTCTTTACATTAGCAAAGTATGGTTGTGACTTATAAG

                     
        941 TAATTTTAT
        131 TAATTTTAT

                                               *                             
        950 GATATTGTGATATCCTCGTACCGATAATATGATATGTTATTGACTTATTTGGTTCTTTGTTGACA
          1 GATATTGTGATATCCTCGTACCGATAATATGATATATTATTGACTTATTTGGTTCTTTGTTGACA

                                                                             
       1015 ACCGTTTCTTATCATGTAGTTTTTAAATTTCTTTACATTAGCAAAGTATGGTTGTGACTTATAAG
         66 ACCGTTTCTTATCATGTAGTTTTTAAATTTCTTTACATTAGCAAAGTATGGTTGTGACTTATAAG

                     
       1080 TAATTTTAT
        131 TAATTTTAT

                  ***                                    *                   
       1089 GATATTACAATATCCTCGTACCGATAATATGATATATTATTGACTAATTTGGTTCTTTGTTGACA
          1 GATATTGTGATATCCTCGTACCGATAATATGATATATTATTGACTTATTTGGTTCTTTGTTGACA

                   *                                          *              
       1154 ACCGTTTTTTATCATGTAGTTTTTAAATTTCTTTACATTAGCAAAGTATGATTGTGACTTATAAG
         66 ACCGTTTCTTATCATGTAGTTTTTAAATTTCTTTACATTAGCAAAGTATGGTTGTGACTTATAAG

                     
       1219 TAATTTTAT
        131 TAATTTTAT

              
       1228 GA
          1 GA

       1230 ATATAATTTT


Statistics
Matches: 268,  Mismatches: 12, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
 139  268  1.00

ACGTcount: A:0.28, C:0.11, G:0.15, T:0.46


Consensus pattern (139 bp):   
GATATTGTGATATCCTCGTACCGATAATATGATATATTATTGACTTATTTGGTTCTTTGTTGACA
ACCGTTTCTTATCATGTAGTTTTTAAATTTCTTTACATTAGCAAAGTATGGTTGTGACTTATAAG
TAATTTTAT

Done.