Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g01682.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2233
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.28


Found at i:167 original size:12 final size:11

Alignment explanation


    Indices: 143--177  Score: 54
    Period size: 12  Copynumber: 3.2  Consensus size: 11

        133 TTTCAACAAG

                       
        143 TTTTCC-TTCA
          1 TTTTCCTTTCA

                        
        153 TTTTCCTTGTCA
          1 TTTTCCTT-TCA

                       
        165 TTTTCCTTTCA
          1 TTTTCCTTTCA

              
        176 TT
          1 TT

        178 GTCTGCAAAT


Statistics
Matches: 23,  Mismatches: 0, Indels: 3
        0.88            0.00        0.12

Matches are distributed among these distances:
  10    6  0.26
  11    6  0.26
  12   11  0.48

ACGTcount: A:0.09, C:0.26, G:0.03, T:0.63


Consensus pattern (11 bp):   
TTTTCCTTTCA

Found at i:2078 original size:47 final size:47

Alignment explanation


    Indices: 2010--2103  Score: 188
    Period size: 47  Copynumber: 2.0  Consensus size: 47

       2000 TTGGATAGCT

                                                           
       2010 TTGTTGTATTCTTTTCATTACAGAGAAACTTCTAATCATAAATTTGG
          1 TTGTTGTATTCTTTTCATTACAGAGAAACTTCTAATCATAAATTTGG

                                                           
       2057 TTGTTGTATTCTTTTCATTACAGAGAAACTTCTAATCATAAATTTGG
          1 TTGTTGTATTCTTTTCATTACAGAGAAACTTCTAATCATAAATTTGG

       2104 AATCTTTAAT


Statistics
Matches: 47,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  47   47  1.00

ACGTcount: A:0.30, C:0.13, G:0.13, T:0.45


Consensus pattern (47 bp):   
TTGTTGTATTCTTTTCATTACAGAGAAACTTCTAATCATAAATTTGG
Done.