Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g01692.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 895

Length: 1492
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26


Found at i:315 original size:66 final size:65

Alignment explanation


    Indices: 239--439  Score: 269
    Period size: 66  Copynumber: 3.0  Consensus size: 65

        229 ACCAATCCCT

                                   *            *  *         **              
        239 GAAACAGGGAAGGAAAAAGAGACAAAATCGACGTCGCAATTGCCATTTGTTATAGGGGAACCTGA
          1 GAAACAGGGAA-GAAAAAGAGACGAAATCGACGTCGAAACTGCCATTTGCGATAGGGGAACCTGA

             
        304 A
         65 A

                                    *      *                                 
        305 GAAACAGGGAAGAAAGAAGAGACGGAATCGAAGTCGAAACTGCCATTTGCGATAGGGGAACCTGA
          1 GAAACAGGGAAGAAA-AAGAGACGAAATCGACGTCGAAACTGCCATTTGCGATAGGGGAACCTGA

             
        370 A
         65 A

                                 *                          *            *   
        371 GAAACAGGGAAGAAAAAGGAGGCGAAATCGACGTC-AAAGCTGCCATTCGCGATAGGGGAAACTG
          1 GAAACAGGGAAGAAAAA-GAGACGAAATCGACGTCGAAA-CTGCCATTTGCGATAGGGGAACCTG

              
        435 AA
         64 AA

               
        437 GAA
          1 GAA

        440 GGATGTGATA


Statistics
Matches: 120,  Mismatches: 12, Indels: 6
        0.87            0.09        0.04

Matches are distributed among these distances:
  65    9  0.08
  66  111  0.93

ACGTcount: A:0.41, C:0.15, G:0.30, T:0.13


Consensus pattern (65 bp):   
GAAACAGGGAAGAAAAAGAGACGAAATCGACGTCGAAACTGCCATTTGCGATAGGGGAACCTGAA
Done.