Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g01736.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 964

Length: 1607
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30


Found at i:97 original size:24 final size:24

Alignment explanation


    Indices: 70--116  Score: 69
    Period size: 24  Copynumber: 2.0  Consensus size: 24

         60 TAGCCTTAAC

                            *        
         70 CTCTTATTT-TCCACATTTTACCCT
          1 CTCTTATTTCTCCA-AATTTACCCT

                                   
         94 CTCTTATTTCTCCAAATTTACCC
          1 CTCTTATTTCTCCAAATTTACCC

        117 AAGAAATGCA


Statistics
Matches: 21,  Mismatches: 1, Indels: 2
        0.88            0.04        0.08

Matches are distributed among these distances:
  24   17  0.81
  25    4  0.19

ACGTcount: A:0.19, C:0.34, G:0.00, T:0.47


Consensus pattern (24 bp):   
CTCTTATTTCTCCAAATTTACCCT
Done.