Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g01740.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4974
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30


Found at i:786 original size:20 final size:21

Alignment explanation


    Indices: 761--805  Score: 56
    Period size: 21  Copynumber: 2.2  Consensus size: 21

        751 TGAGTTTGGG

                          *      
        761 TTTGAAATTG-GGATATATAA
          1 TTTGAAATTGTGGACATATAA

                  *          *   
        781 TTTGAACTTGTGGACATTTAA
          1 TTTGAAATTGTGGACATATAA

                
        802 TTTG
          1 TTTG

        806 GTTTAATTTT


Statistics
Matches: 21,  Mismatches: 3, Indels: 1
        0.84            0.12        0.04

Matches are distributed among these distances:
  20    9  0.43
  21   12  0.57

ACGTcount: A:0.31, C:0.04, G:0.20, T:0.44


Consensus pattern (21 bp):   
TTTGAAATTGTGGACATATAA

Done.