Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g01762.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3407
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.27


Found at i:1892 original size:72 final size:72

Alignment explanation


    Indices: 1800--1949  Score: 248
    Period size: 72  Copynumber: 2.1  Consensus size: 72

       1790 ATTTGATGCC

                           *                                                *
       1800 ACCACTCAAGTCGTTTGATGACAAATCAAGTGAAGTAAGGTTCACAAGATCAAAAATGGAATC-T
          1 ACCACTCAAGTCGTTCGATGACAAATCAAGTGAAGTAAGGTTCACAAGATCAAAAATGGAA-CAC

                   *
       1864 GGTATTGG
         65 GGTATTGA

                       *                                                     
       1872 ACCACTCAAGTTGTTCGATGACAAATCAAGTGAAGTAAGGTTCACAAGATCAAAAATGGAACACG
          1 ACCACTCAAGTCGTTCGATGACAAATCAAGTGAAGTAAGGTTCACAAGATCAAAAATGGAACACG

                   
       1937 GTATTGA
         66 GTATTGA

                  
       1944 ACCACT
          1 ACCACT

       1950 AATGTTATTA


Statistics
Matches: 73,  Mismatches: 4, Indels: 2
        0.92            0.05        0.03

Matches are distributed among these distances:
  71    1  0.01
  72   72  0.99

ACGTcount: A:0.39, C:0.17, G:0.21, T:0.23


Consensus pattern (72 bp):   
ACCACTCAAGTCGTTCGATGACAAATCAAGTGAAGTAAGGTTCACAAGATCAAAAATGGAACACG
GTATTGA

Done.