Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g01763.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1900
ACGTcount: A:0.33, C:0.16, G:0.23, T:0.27


Found at i:1103 original size:177 final size:177

Alignment explanation


    Indices: 834--1289  Score: 702
    Period size: 177  Copynumber: 2.6  Consensus size: 177

        824 GGGTGTATGC

                               **    *          *     *      *  * **         
        834 AAAAAGGCAATCTGCTAGGCGTAAAACCCAAG---CAGAAACAACTGAAGATGTAATTGAGGTAG
          1 AAAAAGGCAATCTGCTAGGTTTAAAGCCCAAGAACCTGAAACTACTGAATATATGTTTGAGGTAG

                                                                             
        896 ATGATACAAAATCTTTTGATTCTACCTGTGATGATAAGGTCCATGGGAGTGGCCCTTCTGATATC
         66 ATGATACAAAATCTTTTGATTCTACCTGTGATGATAAGGTCCATGGGAGTGGCCCTTCTGATATC

                        * *                                
        961 AAACCAGTCCAAGCTAAGGAAGGGATTGACAACAAAAGGGTTTGTTT
        131 AAACCAGTCCAAACCAAGGAAGGGATTGACAACAAAAGGGTTTGTTT

              *                      *                                       
       1008 AAGAAGGCAATCTGCTAGGTTTAAATCCCAAGAACCTGAAACTACTGAATATATGTTTGAGGTAG
          1 AAAAAGGCAATCTGCTAGGTTTAAAGCCCAAGAACCTGAAACTACTGAATATATGTTTGAGGTAG

                                                                             
       1073 ATGATACAAAATCTTTTGATTCTACCTGTGATGATAAGGTCCATGGGAGTGGCCCTTCTGATATC
         66 ATGATACAAAATCTTTTGATTCTACCTGTGATGATAAGGTCCATGGGAGTGGCCCTTCTGATATC

                                *               *          
       1138 AAACCAGTCCAAACCAAGGAGGGGATTGACAACAAAGGGGTTTGTTT
        131 AAACCAGTCCAAACCAAGGAAGGGATTGACAACAAAAGGGTTTGTTT

                    *                                               **       
       1185 AAAAAGGCTATCTGCTAGGTTTAAAGCCCAAGAACCTGAAACTACTGAATATATGTGCGAGGTAG
          1 AAAAAGGCAATCTGCTAGGTTTAAAGCCCAAGAACCTGAAACTACTGAATATATGTTTGAGGTAG

                              * *   *               
       1250 ATGATACAAAATCTTTTGCTCCTATCTGTGATGATAAGGT
         66 ATGATACAAAATCTTTTGATTCTACCTGTGATGATAAGGT

       1290 GTGTAAAAGT


Statistics
Matches: 257,  Mismatches: 22, Indels: 3
        0.91            0.08        0.01

Matches are distributed among these distances:
 174   28  0.11
 177  229  0.89

ACGTcount: A:0.34, C:0.17, G:0.23, T:0.26


Consensus pattern (177 bp):   
AAAAAGGCAATCTGCTAGGTTTAAAGCCCAAGAACCTGAAACTACTGAATATATGTTTGAGGTAG
ATGATACAAAATCTTTTGATTCTACCTGTGATGATAAGGTCCATGGGAGTGGCCCTTCTGATATC
AAACCAGTCCAAACCAAGGAAGGGATTGACAACAAAAGGGTTTGTTT

Done.