Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga06g01763.F4
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1785
ACGTcount: A:0.34, C:0.17, G:0.23, T:0.26
Found at i:988 original size:177 final size:177
Alignment explanation
Indices: 719--1174 Score: 702
Period size: 177 Copynumber: 2.6 Consensus size: 177
709 GGGTGTATGC
** * * * * * **
719 AAAAAGGCAATCTGCTAGGCGTAAAACCCAAG---CAGAAACAACTGAAGATGTAATTGAGGTAG
1 AAAAAGGCAATCTGCTAGGTTTAAAGCCCAAGAACCTGAAACTACTGAATATATGTTTGAGGTAG
781 ATGATACAAAATCTTTTGATTCTACCTGTGATGATAAGGTCCATGGGAGTGGCCCTTCTGATATC
66 ATGATACAAAATCTTTTGATTCTACCTGTGATGATAAGGTCCATGGGAGTGGCCCTTCTGATATC
* *
846 AAACCAGTCCAAGCTAAGGAAGGGATTGACAACAAAAGGGTTTGTTT
131 AAACCAGTCCAAACCAAGGAAGGGATTGACAACAAAAGGGTTTGTTT
* *
893 AAGAAGGCAATCTGCTAGGTTTAAATCCCAAGAACCTGAAACTACTGAATATATGTTTGAGGTAG
1 AAAAAGGCAATCTGCTAGGTTTAAAGCCCAAGAACCTGAAACTACTGAATATATGTTTGAGGTAG
958 ATGATACAAAATCTTTTGATTCTACCTGTGATGATAAGGTCCATGGGAGTGGCCCTTCTGATATC
66 ATGATACAAAATCTTTTGATTCTACCTGTGATGATAAGGTCCATGGGAGTGGCCCTTCTGATATC
* *
1023 AAACCAGTCCAAACCAAGGAGGGGATTGACAACAAAGGGGTTTGTTT
131 AAACCAGTCCAAACCAAGGAAGGGATTGACAACAAAAGGGTTTGTTT
* **
1070 AAAAAGGCTATCTGCTAGGTTTAAAGCCCAAGAACCTGAAACTACTGAATATATGTGCGAGGTAG
1 AAAAAGGCAATCTGCTAGGTTTAAAGCCCAAGAACCTGAAACTACTGAATATATGTTTGAGGTAG
* * *
1135 ATGATACAAAATCTTTTGCTCCTATCTGTGATGATAAGGT
66 ATGATACAAAATCTTTTGATTCTACCTGTGATGATAAGGT
1175 GTGTAAAAGT
Statistics
Matches: 257, Mismatches: 22, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
174 28 0.11
177 229 0.89
ACGTcount: A:0.34, C:0.17, G:0.23, T:0.26
Consensus pattern (177 bp):
AAAAAGGCAATCTGCTAGGTTTAAAGCCCAAGAACCTGAAACTACTGAATATATGTTTGAGGTAG
ATGATACAAAATCTTTTGATTCTACCTGTGATGATAAGGTCCATGGGAGTGGCCCTTCTGATATC
AAACCAGTCCAAACCAAGGAAGGGATTGACAACAAAAGGGTTTGTTT
Done.