Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g01778.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 469

Length: 782
ACGTcount: A:0.29, C:0.24, G:0.13, T:0.34


Found at i:96 original size:13 final size:14

Alignment explanation


    Indices: 65--98  Score: 54
    Period size: 13  Copynumber: 2.6  Consensus size: 14

         55 ATTATCCCTT

                          
         65 CTTTTATTCATCTC
          1 CTTTTATTCATCTC

                          
         79 C-TTTATTCAT-TC
          1 CTTTTATTCATCTC

                    
         91 CTTTTATT
          1 CTTTTATT

         99 TCCTTTATTC


Statistics
Matches: 19,  Mismatches: 0, Indels: 3
        0.86            0.00        0.14

Matches are distributed among these distances:
  12    3  0.16
  13   15  0.79
  14    1  0.05

ACGTcount: A:0.15, C:0.24, G:0.00, T:0.62


Consensus pattern (14 bp):   
CTTTTATTCATCTC
Done.