Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g01781.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 847

Length: 1413
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27


Found at i:229 original size:5 final size:5

Alignment explanation


    Indices: 219--244  Score: 52
    Period size: 5  Copynumber: 5.2  Consensus size: 5

        209 GTGAGTGAGC

                                           
        219 AGAAG AGAAG AGAAG AGAAG AGAAG A
          1 AGAAG AGAAG AGAAG AGAAG AGAAG A

        245 ATAATGGAGG


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   5   21  1.00

ACGTcount: A:0.62, C:0.00, G:0.38, T:0.00


Consensus pattern (5 bp):   
AGAAG

Done.