Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g01781.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2203
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.30


Found at i:1022 original size:5 final size:5

Alignment explanation


    Indices: 1012--1037  Score: 52
    Period size: 5  Copynumber: 5.2  Consensus size: 5

       1002 GTGAGTGAGC

                                           
       1012 AGAAG AGAAG AGAAG AGAAG AGAAG A
          1 AGAAG AGAAG AGAAG AGAAG AGAAG A

       1038 ATAATGGAGG


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   5   21  1.00

ACGTcount: A:0.62, C:0.00, G:0.38, T:0.00


Consensus pattern (5 bp):   
AGAAG

Done.