Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g01789.C1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3200
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.32


Found at i:2890 original size:47 final size:47

Alignment explanation


    Indices: 2816--2906  Score: 164
    Period size: 47  Copynumber: 1.9  Consensus size: 47

       2806 ATTGTCCCAC

                                        *                  
       2816 GGATATCTGAAAATAGATACGAAGATATGATCCTTCAAGGACTTTTG
          1 GGATATCTGAAAATAGATACGAAGATATAATCCTTCAAGGACTTTTG

                *                                       
       2863 GGATGTCTGAAAATAGATACGAAGATATAATCCTTCAAGGACTT
          1 GGATATCTGAAAATAGATACGAAGATATAATCCTTCAAGGACTT

       2907 CTCAAATATT


Statistics
Matches: 42,  Mismatches: 2, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  47   42  1.00

ACGTcount: A:0.37, C:0.13, G:0.21, T:0.29


Consensus pattern (47 bp):   
GGATATCTGAAAATAGATACGAAGATATAATCCTTCAAGGACTTTTG
Done.