Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga06g01807.F1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4212
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.30
Found at i:3486 original size:245 final size:245
Alignment explanation
Indices: 3044--3533 Score: 953
Period size: 245 Copynumber: 2.0 Consensus size: 245
3034 TAGTAGCCAT
*
3044 GTCCAATCCATGTCTCTTTGTAGGTATAGGATATGAGGATATGATCCTTCATCGACCTTCCAAAA
1 GTCCAATCCATGTCTCGTTGTAGGTATAGGATATGAGGATATGATCCTTCATCGACCTTCCAAAA
3109 TTATGGAAATCTTGAAAAATAATTGATGACACCATATTCCCCTATAACCAACTCATATCAGAGTC
66 TTATGGAAATCTTGAAAAATAATTGATGACACCATATTCCCCTATAACCAACTCATATCAGAGTC
* *
3174 CAAGTAACATAGCCCTTAATGATGCCATGCCTTTTCTGATCTTCTTTCTCCCCCGTAGATTATTT
131 CAAGTAACATAGCCCTTAATGATGCCATGCCTTTTCTGATCTTCTTTCTCCCCCATAGATGATTT
3239 TGTTTTGAGTTCTTATAGTTTTCTGGAACTGGTTTCTTTTATGCTAAACA
196 TGTTTTGAGTTCTTATAGTTTTCTGGAACTGGTTTCTTTTATGCTAAACA
3289 GTCCAATCCATGTCTCGTTGTAGGTATAGGATATGAGGATATGATCCTTCATCGACCTTCCAAAA
1 GTCCAATCCATGTCTCGTTGTAGGTATAGGATATGAGGATATGATCCTTCATCGACCTTCCAAAA
3354 TTATGGAAATCTTGAAAAATAATTGATGACACCATATTCCCCTATAACCAACTCATATCAGAGTC
66 TTATGGAAATCTTGAAAAATAATTGATGACACCATATTCCCCTATAACCAACTCATATCAGAGTC
3419 CAAGTAACATAGCCCTTAATGATGCCATGCCTTTTCTGATCTTCTTTCTCCCCCATAGATGATTT
131 CAAGTAACATAGCCCTTAATGATGCCATGCCTTTTCTGATCTTCTTTCTCCCCCATAGATGATTT
3484 TGTTTTGAGTTCTTATAGTTTTCTGGAACTGGTTTCTTTTATGCTAAACA
196 TGTTTTGAGTTCTTATAGTTTTCTGGAACTGGTTTCTTTTATGCTAAACA
3534 TTCAAATCAT
Statistics
Matches: 242, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
245 242 1.00
ACGTcount: A:0.28, C:0.21, G:0.15, T:0.36
Consensus pattern (245 bp):
GTCCAATCCATGTCTCGTTGTAGGTATAGGATATGAGGATATGATCCTTCATCGACCTTCCAAAA
TTATGGAAATCTTGAAAAATAATTGATGACACCATATTCCCCTATAACCAACTCATATCAGAGTC
CAAGTAACATAGCCCTTAATGATGCCATGCCTTTTCTGATCTTCTTTCTCCCCCATAGATGATTT
TGTTTTGAGTTCTTATAGTTTTCTGGAACTGGTTTCTTTTATGCTAAACA
Done.