Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g01808.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 850

Length: 1417
ACGTcount: A:0.28, C:0.16, G:0.23, T:0.32


Found at i:1201 original size:27 final size:27

Alignment explanation


    Indices: 1170--1223  Score: 108
    Period size: 27  Copynumber: 2.0  Consensus size: 27

       1160 TTAGAGGGGA

                                       
       1170 TAGCTAGTAGCTTTAAGCATTTGTATT
          1 TAGCTAGTAGCTTTAAGCATTTGTATT

                                       
       1197 TAGCTAGTAGCTTTAAGCATTTGTATT
          1 TAGCTAGTAGCTTTAAGCATTTGTATT

       1224 CTGAGAGCAA


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  27   27  1.00

ACGTcount: A:0.26, C:0.11, G:0.19, T:0.44


Consensus pattern (27 bp):   
TAGCTAGTAGCTTTAAGCATTTGTATT
Done.