Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g01815.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 776

Length: 1294
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27


Found at i:579 original size:72 final size:72

Alignment explanation


    Indices: 462--604  Score: 250
    Period size: 72  Copynumber: 2.0  Consensus size: 72

        452 CAATCCTATC

                 *                                                 *         
        462 AGATTCGTGCCACAGTGGTGGTCTCATTGAAAAAGAGAAAGAACAATTTGGTGCTGAGCATACGA
          1 AGATTAGTGCCACAGTGGTGGTCTCATTGAAAAAGAGAAAGAACAATTTGGTGCTAAGCATACGA

                   
        527 CGACACG
         66 CGACACG

                         *                                                *  
        534 AGATTAGTGCCACTGTGGTGGTCTCATTGAAAAAGAGAAAGAACAATTTGGTGCTAAGCATAGGA
          1 AGATTAGTGCCACAGTGGTGGTCTCATTGAAAAAGAGAAAGAACAATTTGGTGCTAAGCATACGA

                  
        599 CGACAC
         66 CGACAC

        605 CAGTAAAATC


Statistics
Matches: 67,  Mismatches: 4, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  72   67  1.00

ACGTcount: A:0.34, C:0.17, G:0.27, T:0.22


Consensus pattern (72 bp):   
AGATTAGTGCCACAGTGGTGGTCTCATTGAAAAAGAGAAAGAACAATTTGGTGCTAAGCATACGA
CGACACG

Found at i:1008 original size:18 final size:18

Alignment explanation


    Indices: 985--1020  Score: 72
    Period size: 18  Copynumber: 2.0  Consensus size: 18

        975 TACCATCAGT

                              
        985 TTGAAGGAGAATGGATTC
          1 TTGAAGGAGAATGGATTC

                              
       1003 TTGAAGGAGAATGGATTC
          1 TTGAAGGAGAATGGATTC

       1021 AAGCAGAACC


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  18   18  1.00

ACGTcount: A:0.33, C:0.06, G:0.33, T:0.28


Consensus pattern (18 bp):   
TTGAAGGAGAATGGATTC
Done.