Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g01821.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 726

Length: 1210
ACGTcount: A:0.28, C:0.20, G:0.21, T:0.31


Found at i:1098 original size:29 final size:29

Alignment explanation


    Indices: 1066--1130  Score: 96
    Period size: 29  Copynumber: 2.2  Consensus size: 29

       1056 CATCTGTGTA

                   *              *       
       1066 TGTGTTTGCTTATTACTATCGTCTG-CGTG
          1 TGTGTTTCCTTATTACTATCGTATGTC-TG

                                         
       1095 TGTGTTTCCTTATTACTATCGTATGTCTG
          1 TGTGTTTCCTTATTACTATCGTATGTCTG

                   
       1124 TGTGTTT
          1 TGTGTTT

       1131 TAAGGCCTTC


Statistics
Matches: 33,  Mismatches: 2, Indels: 2
        0.89            0.05        0.05

Matches are distributed among these distances:
  29   32  0.97
  30    1  0.03

ACGTcount: A:0.11, C:0.15, G:0.22, T:0.52


Consensus pattern (29 bp):   
TGTGTTTCCTTATTACTATCGTATGTCTG
Done.