Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g01821.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 502

Length: 838
ACGTcount: A:0.29, C:0.19, G:0.20, T:0.31


Found at i:804 original size:23 final size:23

Alignment explanation


    Indices: 759--804  Score: 58
    Period size: 23  Copynumber: 2.0  Consensus size: 23

        749 TGCAGTTTAA

                *             *    
        759 TTTGTATTTTGGGCCTTGTTATT
          1 TTTGGATTTTGGGCCTTGGTATT

                                    
        782 TTTGGATTTTGGG-CTTAGGTATT
          1 TTTGGATTTTGGGCCTT-GGTATT

        805 ATTATGGACA


Statistics
Matches: 20,  Mismatches: 2, Indels: 2
        0.83            0.08        0.08

Matches are distributed among these distances:
  22    3  0.15
  23   17  0.85

ACGTcount: A:0.11, C:0.07, G:0.26, T:0.57


Consensus pattern (23 bp):   
TTTGGATTTTGGGCCTTGGTATT
Done.