Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g01828.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 541

Length: 903
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.27


Found at i:207 original size:12 final size:12

Alignment explanation


    Indices: 175--208  Score: 50
    Period size: 12  Copynumber: 2.8  Consensus size: 12

        165 TGACGACGAG

                    *   
        175 GAAGATGACGAT
          1 GAAGATGATGAT

              *         
        187 GACGATGATGAT
          1 GAAGATGATGAT

                      
        199 GAAGATGATG
          1 GAAGATGATG

        209 CCGAAGGTCA


Statistics
Matches: 19,  Mismatches: 3, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  12   19  1.00

ACGTcount: A:0.38, C:0.06, G:0.35, T:0.21


Consensus pattern (12 bp):   
GAAGATGATGAT
Done.