Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g01829.M1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5085
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.31


Found at i:645 original size:12 final size:12

Alignment explanation


    Indices: 625--663  Score: 51
    Period size: 12  Copynumber: 3.2  Consensus size: 12

        615 CCGCCCCAAT

                *       
        625 CCTAACCCTAAC
          1 CCTAGCCCTAAC

                      * 
        637 CCTAGCCCTAGC
          1 CCTAGCCCTAAC

              *         
        649 CCCAGCCCTAAC
          1 CCTAGCCCTAAC

               
        661 CCT
          1 CCT

        664 TCGATTAATT


Statistics
Matches: 22,  Mismatches: 5, Indels: 0
        0.81            0.19        0.00

Matches are distributed among these distances:
  12   22  1.00

ACGTcount: A:0.23, C:0.54, G:0.08, T:0.15


Consensus pattern (12 bp):   
CCTAGCCCTAAC

Found at i:2220 original size:22 final size:25

Alignment explanation


    Indices: 2190--2235  Score: 62
    Period size: 22  Copynumber: 2.0  Consensus size: 25

       2180 CCATAATTGA

                                     
       2190 GATGAATCCA-G-TGT-GTTGTTTT
          1 GATGAATCCATGTTGTGGTTGTTTT

                *                   
       2212 GATGGATCCATGTTGTGGTTGTTT
          1 GATGAATCCATGTTGTGGTTGTTT

       2236 ATTATTCCTT


Statistics
Matches: 20,  Mismatches: 1, Indels: 3
        0.83            0.04        0.12

Matches are distributed among these distances:
  22    9  0.45
  23    1  0.05
  24    3  0.15
  25    7  0.35

ACGTcount: A:0.15, C:0.09, G:0.30, T:0.46


Consensus pattern (25 bp):   
GATGAATCCATGTTGTGGTTGTTTT
Done.